![]() ![]() This compression helps reduce the file size significantly. BAM stands for Binary Alignment Map, and is the compressed, binary version of a SAM file.In this tutorial we will introduce the format, provide useful links to tools and documentation, as well as help you to get started with some basic examples of creation and inspection. SAM is an important biological file format, not least because of the extensive ecosystem of tools which require it as input, but also thanks to the range of utilities which make it easy to write, query and transform them. In this tutorial, we'll focus on aligned-SAM files. However, the SAM format is also used to store unaligned nucleotide sequence data, and this is use-case is steadily increasing in popularity. ![]() The SAM format is a file type most commonly used to store the results of nucleotide sequence alignments. ![]()
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